CDS

Accession Number TCMCG042C02188
gbkey CDS
Protein Id XP_016434324.1
Location join(<7..242,334..1124,1230..1315,1411..1593,1722..2036,2590..2894,2978..3432,3586..3712,4046..>4064)
Gene LOC107760740
GeneID 107760740
Organism Nicotiana tabacum

Protein

Length 839aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA319578
db_source XM_016578838.1
Definition PREDICTED: pre-mRNA-processing-splicing factor 8-like, partial [Nicotiana tabacum]

EGGNOG-MAPPER Annotation

COG_category A
Description U5-snRNA binding site 2 of PrP8
KEGG_TC -
KEGG_Module M00354        [VIEW IN KEGG]
M00355        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12856        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0000244        [VIEW IN EMBL-EBI]
GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0000386        [VIEW IN EMBL-EBI]
GO:0000387        [VIEW IN EMBL-EBI]
GO:0000398        [VIEW IN EMBL-EBI]
GO:0002237        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005681        [VIEW IN EMBL-EBI]
GO:0005682        [VIEW IN EMBL-EBI]
GO:0005684        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009617        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0017069        [VIEW IN EMBL-EBI]
GO:0017070        [VIEW IN EMBL-EBI]
GO:0022607        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0022618        [VIEW IN EMBL-EBI]
GO:0030532        [VIEW IN EMBL-EBI]
GO:0030619        [VIEW IN EMBL-EBI]
GO:0030620        [VIEW IN EMBL-EBI]
GO:0030623        [VIEW IN EMBL-EBI]
GO:0031593        [VIEW IN EMBL-EBI]
GO:0032496        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033993        [VIEW IN EMBL-EBI]
GO:0034097        [VIEW IN EMBL-EBI]
GO:0034612        [VIEW IN EMBL-EBI]
GO:0034622        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0036002        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043933        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046540        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0065003        [VIEW IN EMBL-EBI]
GO:0070530        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0071005        [VIEW IN EMBL-EBI]
GO:0071007        [VIEW IN EMBL-EBI]
GO:0071011        [VIEW IN EMBL-EBI]
GO:0071013        [VIEW IN EMBL-EBI]
GO:0071216        [VIEW IN EMBL-EBI]
GO:0071219        [VIEW IN EMBL-EBI]
GO:0071222        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071345        [VIEW IN EMBL-EBI]
GO:0071356        [VIEW IN EMBL-EBI]
GO:0071396        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071826        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097157        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0097525        [VIEW IN EMBL-EBI]
GO:0097526        [VIEW IN EMBL-EBI]
GO:0120114        [VIEW IN EMBL-EBI]
GO:0140030        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901700        [VIEW IN EMBL-EBI]
GO:1901701        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
CATCCCATAGTCACCAAGGACCGCCGAGAGAAGAAAGTTCCTGAGGATGACGATGATGATGACTTTACCTTGCCTGAGGGTGTTGAGCCATTGCTGAACGAGACTCCAATCTATACTGATACTACTGCTGCTGGTATTTCCCTGTTGTTTGCCCCACGCCCATTTAACATGAGATCTGGTCGGACAAGGCGTGCTGAAGATATACCCCTTGTGTCAGATTGGTTTAAGGAGCATTGTCCTCCATCATATCCTGTCAAGGTGCGTGTCAGTTATCAGAAGCTACTGAAATGTTTTGTGTTGAATGAGCTGCATCATAGACCTCCCAAGGCCCAGAAGAAGAAGCATCTTTTCCGCTCACTTCAGGCCACAAAATTTTTCCAAACCACAGAACTTGATTGGGCTGAAGCTGGTCTCCAAGTTTGCAAGCAGGGATACAATATGCTGAATCTCTTGATCCATAGGAAAAACCTGAATTATCTTCACCTTGATTACAATTTTAATTTGAAGCCTGTTAAGACACTAACTACAAAGGAACGTAAGAAATCCCGGTTTGGTAATGCTTTCCACCTTTGTCGTGAAATTCTGCGTTTGACAAAGTTAGTTGTTGATGCCAATGTTCAGTTCCGTCTGGGAAATGTTGATGCATTTCAGCTGGCAGATGGATTGCAATACATTTTTTCACATGTGGGTCAGTTGACGGGTATGTACCGTTACAAGTACAGGCTTATGAGGCAGATTCGAATGTGTAAGGATTTGAAACATTTGATCTATTATCGATTCAATACTGGGCCAGTTGGAAAAGGTCCTGGTTGTGGTTTCTGGGCACCTATGTGGAGGGTGTGGTTATTCTTCCTTCGGGGTATAGTGCCTCTTCTGGAACGATGGTTGGGAAACTTACTGGCGAGGCAATTTGAGGGTCGTCATTCGAAGGGGGTGGCCAAAACTGTCACAAAGCAACGTGTTGAAAGCCACTTTGACTTGGAGCTCCGTGCTGCAGTAATGCATGATGTCCTTGATGCTATGCCAGAGGGTATCAAGCAAAATAAAGCGAGAACCATTTTGCAGCATCTAAGTGAAGCATGGCGTTGTTGGAAGGCAAATATTCCTTGGAAGGTCCCAGGTTTGCCTGTTCCTATTGAGAACATGATTCTTCGTTATGTCAAATCAAAAGCTGATTGGTGGACAAATGTTGCTCACTACAACCGTGAACGTATAAGAAGAGGAGCAACTGTTGACAAGACTGTGTGTCGTAAAAACCTTGGAAGATTGACTCGCCTTTGGCTGAAGGCTGAACAGGAGCGGCAACATAACTACTTGAAAGACGGCCCATATGTTACTCCAGAAGAAGCAGTAGCTATTTATACTACCACTGTGCATTGGTTGGAGTCGAGGAAGTTTTCTCCTATTCCATTCCCTCCATTGTCATACAAGCATGACACGAAGCTACTTATCCTTGCCCTTGAGAGACTGAAAGAATCTTACAGTGTGGCTGTGAGGTTAAACCAACAGCAAAGGGAAGAGTTGGGCCTCATTGAGCAAGCTTATGATAATCCGCATGAGGCATTGTCAAGGATTAAGCGTCACCTGCTTACTCAGCGTGCCTTCAAAGAAGTTGGCATAGAGTTCATGGACTTGTACAGTTACCTGATTCCTGTTTATGAGATCGAACCACTTGAGAAGATTACTGATGCGTACCTGGATCAGTACCTATGGTATGAAGGTGATAAGCGCCATCTTTTCCCAAATTGGATTAAGCCTGCCGATTCAGAGCCACCACCACTATTAGTGTATAAATGGTGTCAAGGCATAAACAATTTGCAAGGAGTATGGGACACCAGTGAAGGACAGTGTGTGGTGATGCTGCAGACGAAGTTTGAGAAATTCTTTGAAAAGATTGACCTGACCATGTTGAACAGGCTTCTGCGTTTGGTGCTGGACCACAATATTGCTGATTATGTTACTGCAAAAAACAACGTTGTGCTGTCTTACAAAGATATGAGTCACACAAATTCATATGGGCTAATACGTGGTCTTCAATTTGCTTCATTTGTTGTACAGTACTATGGGCTTGTGTTGGATCTCTTGCTCCTAGGTTTAACTCGAGCTAGTGAAATTGCTGGTCCACCACAGATGCCCAATGAATTCATAACCTTTAGTGATACTAGAGTGGAAACGAGGCATCCTATCCGGTTGTACTCTCGCTACATTGACAAGGTGCATATATTATTTCGCTTCACTCATGAAGAGGCTCGGGACCTTATCCAAAGATATCTTACTGAGCATCCTGATCCCAACAATGAAAACATGGTTGGTTATAACAACAAGAAATGCTGGCCAAGGGACGCAAGAATGAGGCTCATGAAGCATGATGTTAATCTTGGGAGAAGTGTCTTCTGGGACATGAAGAATCGGCTGCCTAGAAGTATTACTACATTGGAGTGGGAAAACAGCTTTGTCTCTGTTTATAGCAAAGATAACCCAAACTTGCTCTTCAGCATGTGTGGATTTGAAGTTCGG
Protein:  
HPIVTKDRREKKVPEDDDDDDFTLPEGVEPLLNETPIYTDTTAAGISLLFAPRPFNMRSGRTRRAEDIPLVSDWFKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQQQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGVWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPNEFITFSDTRVETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVR